NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209010_1000014

Scaffold Ga0209010_1000014


Overview

Basic Information
Taxon OID3300027370 Open in IMG/M
Scaffold IDGa0209010_1000014 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)128204
Total Scaffold Genes99 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)82 (82.83%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004942Metagenome / Metatranscriptome418Y
F007603Metagenome / Metatranscriptome348Y
F020987Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0209010_100001489F007603GGAGMIKLTQKCWGAVAIALLSFTPCAFANSSLTMTGAGNNVMDGIYVGPYYATVNGVANTPVICDDFADETYIGSSWNFTANNFSTLGSALWGNQTTNYEAAAWLTLQMLSLNSNPSNATQVGYLSYAIWSLFDKGALNGLSSTQLAGVNSWLSKVPSGLTPGEFANFVILTPKGCSNGPGSCPGQEFLMLVPEGGAAAMYLLLAGLSCFGAMLLRRRRQAPSASSSMA
Ga0209010_100001491F020987GGAMTNNFEHSFAIIRFNEKTYISGGVVAVVKGTESAQRTLNDFEWCQSQEDRSSGWRYFLEETDLQPGIDPAKATRLRQLRLDLQESQAKSV
Ga0209010_100001494F004942GGAMSEKVFGLGINEVMAYAAVANVLLVVMLTSINIYYAWHAKRQADASSAQVDTANQQREIAAETLSILRKQIEQQRTADLATVGLQLKVAIHTVEDWLKRIGSTAFPQLPDEIRILPIDFSIATQRANAIDPIVGENMGAASLYAGEAETNIRILRSGNPAKPENWKEMQDKATNNLNIAKYKLNVARTRWESTNA
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