NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209010_1000022

Scaffold Ga0209010_1000022


Overview

Basic Information
Taxon OID3300027370 Open in IMG/M
Scaffold IDGa0209010_1000022 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)97901
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (77.42%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024149Metagenome / Metatranscriptome207Y
F046507Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0209010_100002246F024149GAGGLENLRCLRCSREIETGHKSVAVYMFAQTVGIRPRQKSSARRICFCPQCSVSLAMGLPPEGALNLAAWDMIRNLVSADRALNEAAWENLQAVAGLLPPGEADRDPQPPSDAWVNFSRAG
Ga0209010_100002269F046507AGGAGMEAARFVAVFVSIFVAIFCAFISAFDLSRERRKAAREKRIAEYKMAARLLRFNI

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