Basic Information | |
---|---|
Taxon OID | 3300027370 Open in IMG/M |
Scaffold ID | Ga0209010_1000026 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 84693 |
Total Scaffold Genes | 74 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 51 (68.92%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Thunder Bay, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F012247 | Metagenome / Metatranscriptome | 282 | Y |
F014895 | Metagenome / Metatranscriptome | 259 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209010_100002650 | F014895 | N/A | MKFCFVFLLAAASLPALNAAEKPLYQSGKIVDIQQKTKTRILYYQVDTPVTKEDPYYEVSVLVKDTVYVGDYSPRHAGDALPDEWNVPQAEVRLRLDKHYMYLMRPVGTELQFVIMKRMAAAPAQTISGPPSPKK |
Ga0209010_100002660 | F012247 | AGGAG | MLEKGDGIMATYIGAVEDFRKSATAFMQHVDLLAQARDAYQQAMTASADLRTVLDAGDENLRTLMTQLEQALNLHMGKPALERKKPEALKVEAIKTSTEGTSAVRAFP |
⦗Top⦘ |