NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209010_1000172

Scaffold Ga0209010_1000172


Overview

Basic Information
Taxon OID3300027370 Open in IMG/M
Scaffold IDGa0209010_1000172 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24629
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000281Metagenome / Metatranscriptome1382Y
F019863Metagenome / Metatranscriptome227Y
F026323Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0209010_100017211F019863GGAGMSYTEARNHFEKARASAVDKGVIEMLDGLKHLSHAIEEDLRTLEQSIRNIRDIQSHMQIPNSFT
Ga0209010_10001722F000042AGGAGMSVTKFVVKVSRGGTRAAEYVRRVDSIPMLMTTSRKMALLMGRFTAEDAIKSLQSSRCSPELESVLVSA
Ga0209010_10001725F026323GGAGGMDNQELQNSIATIAETLITTQRNLVTVSRSLWAVRISIRELHPDFEEMYLNHFAEPEHAFDTMRDNLLDYGRELADIARRLRAESSQ
Ga0209010_10001727F000281N/AMPNPVKERIVKLREEIAQISEANQLYLRSGKKKLHGEAGDHARRLQRLQEILDELVALTDWKKL
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