NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209010_1000485

Scaffold Ga0209010_1000485


Overview

Basic Information
Taxon OID3300027370 Open in IMG/M
Scaffold IDGa0209010_1000485 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12662
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007233Metagenome / Metatranscriptome355Y
F033134Metagenome178Y
F037842Metagenome / Metatranscriptome167N
F044617Metagenome / Metatranscriptome154N
F065986Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0209010_100048510F033134AGGAMKQEQESKQLITFSSLHIEVLGPRELGNSQQAIRGVTEFLHGVELDVGKLLRERAEMSPILEGFRLRFG
Ga0209010_100048511F007233GGAGMANRKRKEHKRQLSMDTFSDGLKGKVLESVSISNELECRYISLEFDDKTELTITLDTRLTGKLELFDCTTGDQRLVRKIGLIPDDAPVWRPKD
Ga0209010_10004856F044617AGGAMSTSLKPSRQMPAVTAITAEERRKLDERIRDKHQRLRNKYPELYGKVVDWIHHYVEDGTLYVCIRFQDKTDFALEFSPQIVRVGTELCDSATDDFDVIRNYYQEQRE
Ga0209010_10004857F065986GGAMSNIAKRQGRMIRKGKEVRYGSVRIDLIGPTELLHNREAKGAAIDFLRTEILASKDWLKDCARISPSLKRFRLVSIRT
Ga0209010_10004859F037842AGGAGGLKQKTVKARGEGVEYPALTGKVIRQVRFVNDEDYTALTIEFDDSTLVSFRFKANIAFSIDPELSTVKDGNIVKWRELKTRPIMRRVARR
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