NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209010_1000593

Scaffold Ga0209010_1000593


Overview

Basic Information
Taxon OID3300027370 Open in IMG/M
Scaffold IDGa0209010_1000593 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10916
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000410Metagenome / Metatranscriptome1170Y
F002014Metagenome / Metatranscriptome604Y
F034646Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0209010_10005934F000410GAGGMSRKLVWIERERFRGFGCSECNWRFKPSGAPTGNSFDEMLRSFEAQRDEEFTSHVCADHLPKKAR
Ga0209010_10005935F034646GGAMDPEATRKARLAALQEEMDFIHHANELYWRQTDPSDAARTDYFHRQDRLEEIRSELAKLHEHS
Ga0209010_10005937F002014AGGMRTLRIGLALGLLLIAAACSPRDFLTRRLASDLIASSETFKSTEPFFLRTGLISNKDYVSPEYLVLQRRGWVTGSASPCSAEVTPPPCWEVALTPIGVETFHDLIPSGQTESRYFSVPVARRQLTGIAGISKSGNAADVDFLWKWIPLNEVGAALYAGGVQYKSTVGFRRYDDGWRIIEGSAPRSNQGLDDALKNAEPAP
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