NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209981_1045564

Scaffold Ga0209981_1045564


Overview

Basic Information
Taxon OID3300027378 Open in IMG/M
Scaffold IDGa0209981_1045564 Open in IMG/M
Source Dataset NameArabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)659
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere → Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling

Source Dataset Sampling Location
Location NameJoint Genome Institute, California, USA
CoordinatesLat. (o)37.931388Long. (o)-122.021761Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045127Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0209981_10455642F045127N/AMPLTLRLPPLSERPTQPPELRSSRVAAWLTETLTREPGFAARAIGDALAATNRTSVGYSRRLDLTEQYWKSAALLWPRLERQFTRASHPLQGDDLDAAKAALTLANELSTAYKRLLTREASRRFTFGGPRRMVSLVRRAFQATSRVLTNSYLSYAPVPAHTWYDAHDVYVYTRERRIHRHPVTL
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