NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209780_1113606

Scaffold Ga0209780_1113606


Overview

Basic Information
Taxon OID3300027389 Open in IMG/M
Scaffold IDGa0209780_1113606 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus exumae BAHAMAS.2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1444
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameGermany: Marburg
CoordinatesLat. (o)50.8Long. (o)8.81Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001637Metagenome659Y
F013063Metagenome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0209780_11136061F013063GAGVNASHNVIVTCRLVSKVKEFSSRGVLIRQIILPDDVISPGHTMETRSGQFIVCHGRFDDPVHRVCMMSADGRHIVHSHGGQRGSDTGQYNWPAHLAVDDNEFVFVVDVINRRVTLLSPTLEYVRQVVSRDQLKWYPVRLYLHQQQRLLYVAESELKDGEVTAGRVVVFSV
Ga0209780_11136062F001637N/AKGYISPICGESLTEAMYMKICVEGDVHDVITCAKFQNKIFRGYNFTGGQIFHFSY
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