NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209867_1015528

Scaffold Ga0209867_1015528


Overview

Basic Information
Taxon OID3300027393 Open in IMG/M
Scaffold IDGa0209867_1015528 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1077
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016519Metagenome / Metatranscriptome246N
F091938Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209867_10155282F016519N/AMDGWSINMTRCLWQVRNGNGDLTVATSITLKDSMATKRFDKELHDTYDKFGRDVVKSYVSSFWNMEARDNPDRYGIDLYLYKDDLLVGYAEVEVRLSWKTVEFPYEDLNVPARKKKLLTQEMPTHFFSINKDGTALFHCEAAAVLASEVKESRNKYVYQGELFYKVPLDRLSYVVLSTTGEATLS
Ga0209867_10155283F091938N/AGLDIEYNDDICHIVNDGGDTDKLYAYSGILIKLPFISIYIGEFDEIGSLTNSNKSTGE
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