NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209904_1000294

Scaffold Ga0209904_1000294


Overview

Basic Information
Taxon OID3300027394 Open in IMG/M
Scaffold IDGa0209904_1000294 Open in IMG/M
Source Dataset NameThawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712P3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4757
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost → Thawing Permafrost Microbial Communities From The Arctic, Studying Carbon Transformations

Source Dataset Sampling Location
Location NameSweden: Kiruna
CoordinatesLat. (o)68.3534Long. (o)19.0472Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006683Metagenome / Metatranscriptome367Y
F068013Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0209904_10002947F006683GGAGGMNRPDRADVRQVNVKVNGITFESVWLRRSSGANDFDIVIDDPQIGRFALTPAVPDLELRDKDSDWRQVTLDELKKILADDELADAAEEPQASETAERESFNRLVAEGEHIMNAEIALFRAGIPFLQLPFQQNKFGSNLFMVMSVPKARACLQRAGFQAKFDSETVLLDGCNGQAVQLIQGKYRLPRAKS
Ga0209904_10002948F068013GAGGMSDKHKDERFNESLVRCRDRVLTSWACASLLRPDLSPAGKEKLAKNILKMAESKDHRLGITPAQAQEIVLSNVQCIAKNCPLLIFADPLARELNAFFHEDN

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