NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208950_1001367

Scaffold Ga0208950_1001367


Overview

Basic Information
Taxon OID3300027413 Open in IMG/M
Scaffold IDGa0208950_1001367 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_54_BLW_10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11198
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022653Metagenome / Metatranscriptome213N
F035290Metagenome / Metatranscriptome172N
F087234Metagenome / Metatranscriptome110N
F094525Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208950_100136711F035290AGAAGGMIIEKEHCDYYLEVYHWEYTLSDKVVTKKEKNVLSFIGLYRDYELEFEDQLAILTNLRENLISAYMNWPDGDVTVKLTIKEECVNL
Ga0208950_100136712F022653AGGAGMNIFKRLWAFLCFEVKELFSDILSGNLTDTEKDNLFWLFVTLWGLVMVTFFILHESTGAIFDL
Ga0208950_100136715F087234GAGVMTETEMKRKDSSTKDFSDLCSSCLVASVEALMEMDGMVTDIETIQLFDEKEVDYTDGDGIIKYVQQDYDFEDNY
Ga0208950_10013679F094525GAGGMITIEGRIFLLTQQTEAIAFLEGMLYDLDRHALVVVSGYGMMLDDHKQLEEFLNNEPCAFIH
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