Scaffold Ga0209340_1008814

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209340_1008814

Scaffold Ga0209340_1008814

Overview

Basic Information
Taxon OID	3300027419 Open in IMG/M
Scaffold ID	Ga0209340_1008814 Open in IMG/M
Source Dataset Name	Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-23 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3807
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Sampling Location
Location Name	Espanola, New Mexico, United States
Coordinates	Lat. (^o)	35.992	Long. (^o)	-106.0797	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038519	Metagenome	165	Y
F060548	Metagenome	132	Y
F071903	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209340_10088145	F038519	GGAGG	MKMSAIDYAAGEDAAGPYTDEVLLQKTLEIIRQIDPDAEIISRECNPWSEQILAGLLPFRIHVDLVEGMPQLPADVQITWPPSSMEGIQVGNLEFREYFVWAESEKAALRKLATLNKAVQSYSPKAAAAEEL
Ga0209340_10088147	F071903	AGGAGG	MNRIEQAAARREAELQEALGHLEYFKRTALALDQAMKVMAKDLQVCRKNEQIWEKRIAKMQENA
Ga0209340_10088148	F060548	AGGAG	MSTVTNRPRQRKVTDFVDRQVATLIKDHASEDLCIEDLVDAAKRDMPNFEWTNDKIRHSVTRLEKKRLVASEHVIRSKKLCRVPHLI

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