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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027439 Open in IMG/M |
| Scaffold ID | Ga0209332_1001883 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4555 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Thunder Bay, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011101 | Metagenome / Metatranscriptome | 295 | Y |
| F085999 | Metagenome / Metatranscriptome | 111 | Y |
| F095814 | Metagenome / Metatranscriptome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209332_10018832 | F095814 | AGGAG | MLESVVELLFGLFLSALILLVGSCILGSIVAALRAVNRESDGEREKVKEIFTFGAEVTVLDNRLIETGVILMTNTENHYELGR |
| Ga0209332_10018833 | F011101 | AGGA | MQHRATKFASAAFFITSLALASDTWILDADTSNARLFRGSRANSDSVNTGVARVIGKVKLDTNDLDASFFDLSIYPADENWGHVLSPEGTLPTSYAPDATDQTLLTFKSTRILRTGNGRLEVIGDLTLTRVDRDVTASPLEDYAGPVYGDPVIHNVTREITFLFPSVSAAYASGPLTPAMLQTKGVLEIVGAARVDREEFPELISAIKETNWPPVAQNKDCMPSSAGEDYSGTVCTATLIAATRGNNRSMPDSVGEDYSGPQCTPATSNQTIVLDLKFLHKVPEPSVEAHSGKESSGNAAPGRLNRNSN |
| Ga0209332_10018834 | F085999 | N/A | MNAMKTILKIRTLICIVLAVGALLSTPGADASDSDSYPSYLEAKVIAHLPLSGGIRRMFLQQEGRRQFLYVQQPSQHGVTVIDITKPERPKVVNQVPLENLTMVSSGLAIFETPENSATVGASLATGNAEGAQGSGVLESVRVLDVSDPAHPRTVQNFDGVTSILQDSAQNLLYVANGDGVWIVSHQQVLHRHECSSSDAISPLPNCD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |