NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209899_1007277

Scaffold Ga0209899_1007277


Overview

Basic Information
Taxon OID3300027490 Open in IMG/M
Scaffold IDGa0209899_1007277 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2544
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041299Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0209899_10072771F041299N/AVMKLLFYTKLERSEIHKFSSLLLGIFCFLIGETLYFYQQYFLQITIPYPSVAEVPYLLGSLFFSYFLFLCLFSLINRKGFNPLPIILGSSVSIFPIFLILSSAYDLEINKSTELEFIVNALYYTFDALMMVPALVILLNLKKNDPFIFHWISITVALILLVIGDVGYTYFSIISESLIEEFEWLWSIVYALGYLFLGIGIYWFDRIKNTLEDKKINIFLEKDEMDRLKNSSKNELIGDMGTEYSEHIIGYENFVDKLEDFLERSKQIKILFYDKYWLSDEKMSVILDKIQQRAFVTQIQVNILLPISQISFKSFVSYTDNRNILISFFDRTFSSDSLVFIFEEKYVAILDKKPASEFVDNNTEFYGLITNKDTIVWSHIATFEKIWLLEKAVNM
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