NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209899_1047511

Scaffold Ga0209899_1047511


Overview

Basic Information
Taxon OID3300027490 Open in IMG/M
Scaffold IDGa0209899_1047511 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)895
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028550Metagenome / Metatranscriptome191Y
F037411Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0209899_10475111F028550GGAGGMRWLRFPPAAGVAMLLIGLLCVSPAAAQQGPDHLHVDLAQAGCGTLQATGFRLPESTRLSLRFLDASTGRTLRQATATTGADGTLSLSRQVPLTGVSAVRMTVARPGSDKPFAFSELTIPGPCPLPFTGPARWPTLAGLALCLIL
Ga0209899_10475112F037411N/AERGSAGWRSIGGARLLRMAGGTAGGWTLRILAGPSTEGPVGVTVPNVTTTKAKGRYHTNAFVRPSVSGTTVTIGLREYVNGRPVPGSNTLGWTVEGTGWRQFGAIHPTAVAGSRLGLEIMARDLPPGGFLDVDEVVLHLLGSRS
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