NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209788_1158466

Scaffold Ga0209788_1158466


Overview

Basic Information
Taxon OID3300027495 Open in IMG/M
Scaffold IDGa0209788_1158466 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius clavatus LIZARD ISLAND.1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1037
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036570Metagenome169Y
F064438Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0209788_11584661F064438GGAGMNRVCEVDMTGRMLKAFGSSPGEGVGQLSEPYHVSLDDEERIIVADRLNDRVLLLTKHLMLQHVLVTWPRPQPHSDDAGYPERLHYDRQSGQLLLGLASRHVDIYK
Ga0209788_11584662F036570GAGMGVTTLKDKIFIVYHELPFIVVYMSQQPYTRLPNISINGLKRPNDIAAGSSCLYVSDPRSEAIWRAKAADRKVDQWLSGLRAVSISVTSEEKLVLMVVVDILGSTAERSYNHGGEIQIYSAGAVKETVIKLSPDITSPHRVVMTARKTFIVSYGWHGVA
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