NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208987_1011795

Scaffold Ga0208987_1011795


Overview

Basic Information
Taxon OID3300027496 Open in IMG/M
Scaffold IDGa0208987_1011795 Open in IMG/M
Source Dataset NameForest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1453
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameEl Dorado National Forest, Georgetown, California, USA
CoordinatesLat. (o)38.88Long. (o)-120.64Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004891Metagenome / Metatranscriptome419Y
F006048Metagenome382Y

Sequences

Protein IDFamilyRBSSequence
Ga0208987_10117951F004891GGAMIARAPGLGMGVGRFSRPLRGVGVLAMPDAGLDTTRRVESVCVIPLGAGVLRLLVPGVAVGVIIDRRCVADGVEVTR
Ga0208987_10117952F006048AGGAGMLKQRPTLDITRSNWYQVRAQVDKVKSHFIQSARDNIAELYDLHRFESTAERLEFIDSLLADNKYLFPIAERVEGGVRGPNATQRESKAANEWLASTLLPGGSNPVVYLHQILSSGE

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