NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208788_1008281

Scaffold Ga0208788_1008281


Overview

Basic Information
Taxon OID3300027499 Open in IMG/M
Scaffold IDGa0208788_1008281 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4004
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016662Metagenome / Metatranscriptome245Y
F071246Metagenome122N
F082675Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0208788_100828112F071246AGGMGKSQTESTADKIVALLADGRISQAQWRLWIPRRITEHNKMIIANAKNLADGINEVIADEQIALSKELIFDYQTGHDNGQ
Ga0208788_10082813F016662GGAGMTYLVATTEVIYSEEDLIKKMLLTGEYGIHGYPISHEAMVEFVKDQEWQIEHNLFLDKFDVPCQISIKDEDGTDLFFAKNKLEIV
Ga0208788_10082817F082675AGGAGMSKQYHWVVVYDEDWGAFMVDAEGELLDRDRLLYNKESGKWEYLEEDTEQEAEYYRLEEILAYNLTRLDLTKKV
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