NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208788_1010905

Scaffold Ga0208788_1010905


Overview

Basic Information
Taxon OID3300027499 Open in IMG/M
Scaffold IDGa0208788_1010905 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3296
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008616Metagenome / Metatranscriptome330Y
F008811Metagenome / Metatranscriptome327N
F030061Metagenome186N

Sequences

Protein IDFamilyRBSSequence
Ga0208788_10109051F008616AGGMLKLKLTWELETGEKFDEWTRPIELSLAEKELYNSKSIVKILIDESTPSNTLLLFLAHKIQQRVTKKVENFDIWKSKITDIAASDFETANFTKPEVSGEQQ
Ga0208788_10109052F008811AGGAMATTILSGRSLTLTIATKNYSEQILDSAINFDTERLTFDTLAGKAYKYIDSNVTLDINFLNDAGKSPDSLYKALWDATESAPDTTLAFVLTLTTGITLTGTVLPQYPPITATGADAQTCSVSLQVVGIPTEDLTA
Ga0208788_10109053F030061AGTAGGMPLSTLRSGLKTAITSNSNYSCYDHVPEIIIPPACLILASDPYLEPMVIGNSKNYYVRLTLEVVSTTYSNPSALTNLEDDIETILGLLPTNWIILSVSSPRIRSTNSTDLLTAEIQLQTAYTG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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