NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209622_1005586

Scaffold Ga0209622_1005586


Overview

Basic Information
Taxon OID3300027502 Open in IMG/M
Scaffold IDGa0209622_1005586 Open in IMG/M
Source Dataset NameForest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2017
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameDavy Crockett National Forest, Groveton, Texas, USA
CoordinatesLat. (o)31.11Long. (o)-95.15Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060289Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0209622_10055861F060289N/AMKIIRLPQVALLGWALLMATASASAQQERSWLWNAGGVELKLPSTWQEISPSLLRGKVSALGMSVDRLYGAQTSKAGDNLTYPYLLVTIKNGGRMADWQLPQMEQSIRKSVEKSGSQLGRYAWKDGAVWVEVTTGDVKFMNVMLLTEKGLATLSFYSTKEEFASWRRVFEQIGSSAHLQPPLARQSSLMDNSTIGPFLRSLSHVDSVIFFSCVAAGLVALGGVWFVRWRAKAKR
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