NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208973_1004980

Scaffold Ga0208973_1004980


Overview

Basic Information
Taxon OID3300027506 Open in IMG/M
Scaffold IDGa0208973_1004980 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_66_BLW_10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4899
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022889Metagenome / Metatranscriptome212Y
F023556Metagenome / Metatranscriptome209N

Sequences

Protein IDFamilyRBSSequence
Ga0208973_10049804F023556N/AMKEVNAPNIFQGIPSDKPNGDRYEFYHPLYWVFKVENMRIKTLDSRLKDKRKPHARFDVFMYLTTDDSQGELFVRSQDYVYEQVGNDFYVKMKKENFPLVDRNGDAWSFSTDDRIFIKGDIERVN
Ga0208973_10049805F022889GAGMSRKVPKIYAGNTVKKRDRQSFKNFVLEVIKDTFINEFTPTSSSLDSNTQTLFTLFLGSKDGNDDGDLLDRVDINGYRFNYEDLQVDNAYDYLDVYLYGVKQNRDKYDVKLYDGGGTELTSGQFASGSKEIRMIFNEDITRVPTEVPDNAFTIKGKIVEIQ
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