NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255072_1014867

Scaffold Ga0255072_1014867


Overview

Basic Information
Taxon OID3300027508 Open in IMG/M
Scaffold IDGa0255072_1014867 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1661
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013888Metagenome / Metatranscriptome267Y
F038675Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0255072_10148672F013888GGAMNVVGILPASGKASRVGGIPKFCLPISDERSLLQWHVEQMLEVCDEVRVSTRAEWVPIIQNMDMNIKLIVREPSTMSDAVKFMVGDYNDTVLVGMPDTYILNAPGNIYKPLFKKDTADLVLGIWECKEELKGRVGQILVHDDKVTASEDKVDNCEYPDMWGTMLFRKNMIRYIDSTLEHPGKQIKDWISMGANIRAVRPGGQYMDIGTLRGLKRLYKEME
Ga0255072_10148674F038675N/ARYVIQKKTVTEIGKECQVSAMTIQRYLEQFGLIKKR
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