NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209187_1003147

Scaffold Ga0209187_1003147


Overview

Basic Information
Taxon OID3300027509 Open in IMG/M
Scaffold IDGa0209187_1003147 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14279
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameBantry Bay, Ireland
CoordinatesLat. (o)51.64Long. (o)-9.71Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013269Metagenome272Y
F036067Metagenome170Y
F036534Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0209187_10031471F013269GAGMQKMTSRCRWARLPTMVTADAFFPPVNVNDESRGIRIRVDDHEESNGLALQLILPIVVGLKGRVVDFDARITGCDPVVEVTFVTLLRLTQGLDYDGDLPAKAGHEMALAS
Ga0209187_100314715F036534AGAAGMDGYAAGMGGIKIDTLTETNFHEWRQRIKMVLALRDLDDKLDEDGKLADAEDRELASWKRRNTKAIAIIGLTHESEQL
Ga0209187_10031476F036067N/AVAPTEDIHDHIACLALAETANGLRTGRYTGTETPEPAEFDKVVEAQQSDNYSVKMSTRVERGTAKAFFRNKHHALYRRTPYRNRFVIPKSLRKRVLTLEHHATVAAHPGMN
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