NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209187_1004562

Scaffold Ga0209187_1004562


Overview

Basic Information
Taxon OID3300027509 Open in IMG/M
Scaffold IDGa0209187_1004562 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10447
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameBantry Bay, Ireland
CoordinatesLat. (o)51.64Long. (o)-9.71Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027093Metagenome195Y
F100271Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209187_100456215F027093N/AVDPTRGVDEVPVRIQSRPKGIRPRYAPLPKGVGGLNVVAVLTGSTCQVACRVWLDAGRELALRFIVETGSCVSLVREALLPPEMKVALLDAATAQLFDVTWGLLPITETVNLTMRVGICSAPVTSGVVRGMSVPLLLGTDYTDVHVPNICGPEGIIQIRKRCMVPILRRGKTVSYARAGQRSKSGAAGEADIKVRLAH
Ga0209187_10045629F100271N/AMAVARGLAIVKFDEPFLVKLCRFRKDQVIVRKNATSGFAEPYQGPMLSAVLDNNNAKDETDTSSDDASRRGPLEDLDFSKAPEYLHKQIRDMLKTHSSM
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