NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209187_1005924

Scaffold Ga0209187_1005924


Overview

Basic Information
Taxon OID3300027509 Open in IMG/M
Scaffold IDGa0209187_1005924 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8341
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameBantry Bay, Ireland
CoordinatesLat. (o)51.64Long. (o)-9.71Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019271Metagenome230Y
F023776Metagenome208Y
F028401Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0209187_10059244F019271GGAVVVDAHADASTFVIDIDGEEKRVSSDHVTPAPRPTTADTVPHPLLDGLDQRRSPPATADEYVIDKLLDLRQTSDSYSAKVRWFDYGSKDDIWEPLKNLLRNLVVRFLRQTKKHVPGYEWQTPRRRSRRQAGLTTVANIVMDPTWTLTIQHVHVTGDGVIHANVSWTESTIATAVKEVIPGTLRKSTLLSMTRNFAYDPQLAFRHFARLNAEYGPYTYVWPKASRSTLIKPDPTESFHPNGSFVHPVQHLYSVLRRLVSTKEEATVVIPQWTNTSWYATAIRACFEYQVLLSSDTRDTTPTPWAMLTCHFLHRYDD
Ga0209187_10059246F023776N/AVFRSDEEPLSVEEVPQLEDSPHDAEAFSLRGGLVLVCSSESSASISDRMKQLARLLLEEGTTNLVGACVNVDDELPIGLWQGKYQWAQ
Ga0209187_10059249F028401N/AMSYAEKLTTLPRIRDANNNRLVTEYAIHMYVDTGGVRIFDRFLVSDNLLVPCILGTEFIERTIEGILPRFRKIVWQEHVRCTEELPRPTPILACLNDSAWDRHWQYKPARVRAFKQVRANGHKE
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