Scaffold Ga0209187_1006204

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209187_1006204

Scaffold Ga0209187_1006204

Overview

Basic Information
Taxon OID	3300027509 Open in IMG/M
Scaffold ID	Ga0209187_1006204 Open in IMG/M
Source Dataset Name	Marine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8033
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (85.71%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location Name	Bantry Bay, Ireland
Coordinates	Lat. (^o)	51.64	Long. (^o)	-9.71	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009942	Metagenome	310	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209187_10062041	F009942	AGGAG	MSGPVFTECACTARKRKIGALVFLRLSENPEENLDNSLLWATLPHETTEKRRISQQNGESRFCSDLAVGEPMVRRRYALSSCLMLF

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