NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209187_1023629

Scaffold Ga0209187_1023629


Overview

Basic Information
Taxon OID3300027509 Open in IMG/M
Scaffold IDGa0209187_1023629 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2655
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameBantry Bay, Ireland
CoordinatesLat. (o)51.64Long. (o)-9.71Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013269Metagenome272Y
F024709Metagenome204Y
F104363Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209187_10236291F013269AGGAGMITADTFFLAVNVNDKRGRILVCVNDHEGSNGFALQLVLPIVVGRVYEVADLDVRNAGCDPVVEVTFKTLLRLTQGLDYDGDLLAKAGHELAFAS
Ga0209187_10236292F104363GAGMDNFVTGNMDMLDSGYPRGGHDDVGHVCEPGLLATSPCWRLPFVPRYMLLLLLKKSHHQVAWETLQGFPGVVFRPVDEPAHLRAEAVATLA
Ga0209187_10236294F024709AGTAGGVRDVRLRAPRVAAVSAMAHAWVDQVTGWRRAVERADGPGVEAALAILGQAVAGAVDGDGDYERFAQHLKAVQPDGVAAPTRFNAQSVLGRLAHANGGPSGGAPPSARNTRARSVSQESGASVGSRHPCRRGSRRSDEEEEKRDSLLSDLLG
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