Scaffold Ga0209187_1089935

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209187_1089935

Scaffold Ga0209187_1089935

Overview

Basic Information
Taxon OID	3300027509 Open in IMG/M
Scaffold ID	Ga0209187_1089935 Open in IMG/M
Source Dataset Name	Marine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	791
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location Name	Bantry Bay, Ireland
Coordinates	Lat. (^o)	51.64	Long. (^o)	-9.71	Alt. (m)		Depth (m)	2
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013163	Metagenome	273	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209187_10899351	F013163	N/A	DKFSRAALVDNEGVDAFAARLRSLAELCGNIHSEGMMKQQLIQGLPEYLRTDAFVYNSAQRSYQQLSTYGAGKYRAAKDVMALASRRSSGGSSRKGQTSTGPRGLSVNQLHSSWEEGDTATYDTVAVLPSGTPGIRTAGGAPYVRREAPTGPALWYMCWTRGHRVPDCKILTDKQRDLVKAARSTFFRQRNAGAGASSDRTSVVALVWDDRLGGAETTRKEEGDAPPVATPAKGRRRAGN

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.