NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208338_1000053

Scaffold Ga0208338_1000053


Overview

Basic Information
Taxon OID3300027514 Open in IMG/M
Scaffold IDGa0208338_1000053 Open in IMG/M
Source Dataset NameForest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN91 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55539
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location
Location NameBrowns Valley, California, USA
CoordinatesLat. (o)39.23550963Long. (o)-121.2836963Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000621Metagenome981Y
F016445Metagenome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0208338_10000534F016445AGGMSLMTKKTRIDARRVAEIIGCSRKTVLNGGAGTAQLTRIRNGSTQVRFILEEVLAFAEKQERDAQRRLPKAHSIMTS
Ga0208338_100005346F000621GAGGVPTTKHELLDWLMDVPEDAEIGTDGAGLALLAILGTNVHLLEVGHIPNADELYAEAINQAMIERLRRIDAAGGETETGVIIVTFQGYISGIPSLFSTDFNTAFIFKNREQAQTFITEFADELHNPQILDCP

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