NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208787_1051623

Scaffold Ga0208787_1051623


Overview

Basic Information
Taxon OID3300027518 Open in IMG/M
Scaffold IDGa0208787_1051623 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series HT 2014_7_11 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1145
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034549Metagenome174N

Sequences

Protein IDFamilyRBSSequence
Ga0208787_10516231F034549N/ALRPDVPKGTFKNELGNPVRFIGYTENLNKPVEKIIDVVKTYTPKRLNKFTLPIIAGTALAGTAQAKVPSSIQDTETAMQDQVVEGQAPEPKLAEQIKYDSYAGFVKQDDPNVKASQSDVLYWIADNEIPEEVTEVGKMVGEVGAVLGGATLGLGLPDVKKTIEERRAIGKSPITGTLAKGFYRLGSPFATAAFTVPQILDEETTTKDIVTDPLNYLGLATMETLGKRGGTIAAPAAARAPGILGFAKDFGSLKNVGEAVPGKLSTALRLGLSPKVIAGASRFLGIPGLIASSAYSLYDYLSNKESE
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Institute for Fundamental Biomedical Research
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