NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209562_1016141

Scaffold Ga0209562_1016141


Overview

Basic Information
Taxon OID3300027519 Open in IMG/M
Scaffold IDGa0209562_1016141 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius vacuus BELIZE.2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4301
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameGermany: Marburg
CoordinatesLat. (o)50.8Long. (o)8.81Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000296Metagenome1348Y
F005172Metagenome409Y
F030587Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0209562_10161411F000296N/AELFSLGRTAEALRAIIGSKSAISLQRGPVDPKFQVEGVAPHQTFFFSEN
Ga0209562_10161413F005172N/AVFQKKSDAKIQITITTAHIIRINYPLSSFIFRLSGTNVANFNKIHHIVSEQQLFKKWNLKTEFSNMENTN
Ga0209562_10161414F030587N/AMVFTKEDGILIKVLRQSKGYSARKLLEEFPYKDWSCSALDRLLRQIDATCGSADRKSGSSRERTVCTRDMRMSVQMATTLSTNCN
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