NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209562_1020042

Scaffold Ga0209562_1020042


Overview

Basic Information
Taxon OID3300027519 Open in IMG/M
Scaffold IDGa0209562_1020042 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius vacuus BELIZE.2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3942
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameGermany: Marburg
CoordinatesLat. (o)50.8Long. (o)8.81Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005172Metagenome409Y
F030587Metagenome185Y
F067391Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0209562_10200422F067391N/AMAHLIRINYSLSSFNCRLSGTNVANFNKIHHMVSEQQILKKWNSKTEFSNMENTD
Ga0209562_10200423F030587N/AMVFTKEYGILIKVLRQSNSYSARKLLEEFPDKDWSYSALDQLLRQIDATGSADRKSGSSRERTVCTRDMQMSVQMATTLSTNCN
Ga0209562_10200424F005172GGAGGMATNCETTVCSKKSDAKIEIIITATNLIRIKYPLSIFNYHLSGANFANFNKIHCTVFEQQLFEKWNSKTEVSNMKKWPS
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