NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209384_1023349

Scaffold Ga0209384_1023349


Overview

Basic Information
Taxon OID3300027522 Open in IMG/M
Scaffold IDGa0209384_1023349 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1929
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067117Metagenome126N
F080239Metagenome115N
F092711Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209384_10233491F092711GGAGMVQLEITLTGRSKSFTSDTLQDCAKQFFDEFGEASKEVVKCQTFEVNNPTEFLIVGGNESCIG
Ga0209384_10233495F067117N/AMNTKNKEKMKMLQIPVTEKQFNTLKEKADKEKRSLPNSILIVLEPHMKTK
Ga0209384_10233496F080239GGAMTLNIKRMMMEQILNKFYVNRIVGEVFSSLNLENTPSLKDFIVNKSKTVYKNLCGVINPPILDRWNWLVVIPQQFNRYANPCNLLTVLVPPVFIIKNYLLLIKNNIKKSLIIKKEKYEH
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