Scaffold Ga0208890_1001063

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208890_1001063

Scaffold Ga0208890_1001063

Overview

Basic Information
Taxon OID	3300027523 Open in IMG/M
Scaffold ID	Ga0208890_1001063 Open in IMG/M
Source Dataset Name	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2649
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location Name	Laval, Canada
Coordinates	Lat. (^o)	45.54	Long. (^o)	-73.72	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019401	Metagenome / Metatranscriptome	230	Y
F062211	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208890_10010633	F019401	GGAGG	LQSASYAVLDPASYGKGREGMSKPVAKDLDEEEALREVIDALRADNGKLLRLLIAGFVSDGRPEHKELTEVLAHYPNLRNWLGTGELRNLNANQNQVTQREDSDKSSAGQTTIKARRRRGRRGKRKKE
Ga0208890_10010636	F062211	GGCGG	MLYGHQGQTWRLEEYWRLNQTFQVCGPVLIGALLLALPDLALANWWIVRASDKECLVVDIEPTGKDESVTRIGRLVYPTREEAEAEVKRLCK

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