NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208437_1016333

Scaffold Ga0208437_1016333


Overview

Basic Information
Taxon OID3300027525 Open in IMG/M
Scaffold IDGa0208437_1016333 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1904
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038564Metagenome165Y
F041603Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0208437_10163331F038564AGGMQLRSGATTGGTVPRTPPRSPTPETALEIPNQIEITTPQRQEGDEDAAVPRTPVQTPQVYTAGTYVADFGRSPSVPANFRPSQFSFLPQPDYRTAREPSDPGDPDSNGGQPDGSHPIPNQPVISSPQNQVRPGEALRAFTFEAPMRPLDVARNQYLDYTNTQSIKFYNKGCEKLPGEAFNGKMLMTWLVQVQDKANMFTWTSILTIKGKLLTQHFTELSMEEVKAHAQIYQDRGSREAQNAEMLIQCLKASISKTVYNKVYLQMDKYTIYRKNTFKPIQDGVCFLKTIIDNYHSNTRSSAKLIRKQLATLNYYMKNVAKG
Ga0208437_10163332F041603N/ASIPQTVTQLVVNKKPRFGPKVASQAWWIEEIKKDPIYKYTEEWAQHSEYQVARWKVLAELDYQVLGTDTLRGAPGFGKTYPPKIEIKPFWFKPICGVDWQEFKVWSWLEATKSLGLPISEEADKWYKHISTEDLKEGAIKLLGIFKAETSPVLEDDSEYELVYPTTPLINSIVLDIPVGPYYKYLNKTIKDRNYFPITDCQAGLVIKKKFLKVYLEERLGEYLALGGLNELIQRVPLIKAGHKLPDPFFWDLWANLEHLRESYAEYCSQEHFNPEAFEEESVASLDTQT
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