NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209684_1003716

Scaffold Ga0209684_1003716


Overview

Basic Information
Taxon OID3300027527 Open in IMG/M
Scaffold IDGa0209684_1003716 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2595
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000284Metagenome / Metatranscriptome1378Y
F001481Metagenome / Metatranscriptome687Y
F003919Metagenome / Metatranscriptome462Y

Sequences

Protein IDFamilyRBSSequence
Ga0209684_10037162F000284GAGGMLLRTSVAVFAAAISLGLWSGASNTVLAHDIYSNLRDRDGHFCCNGQDCRPVQVTVLPNGSYYLPTTNEIIPADRATPSPDDRFHHCTYSATAYDFEPDGGPMSGGGGIGGEVTRCFFAPMHSS
Ga0209684_10037164F001481N/AMTKLKRSVDPSSLDADWPPHQEIAIADLVAEARAADWDFTNWCLASGYDASDPDARRMFECLLAYARFEGGAGLH
Ga0209684_10037165F003919AGGGGGMKFALPDTSPEDYQKRRSAFLNELIASTPNVSLRAKEFRRWIDENSAYSDNDEA
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