Scaffold Ga0208185_1000211

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0208185_1000211

Scaffold Ga0208185_1000211

Overview

Basic Information
Taxon OID	3300027533 Open in IMG/M
Scaffold ID	Ga0208185_1000211 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	35639
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9232	Long. (^o)	-106.9519	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015651	Metagenome / Metatranscriptome	253	Y
F042553	Metagenome / Metatranscriptome	158	Y
F104660	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208185_100021125	F042553	N/A	MGKLLVVIAIIAAVAFAWHKGWIGEWIGSAVDSGIENTRRIQRDATKVRPADPGAPEEKK
Ga0208185_100021129	F104660	AGGA	MHKEFSTAFWQRAYDSLPAQVRGQYLTQIKAAESWELALGDAIKLWSRAKTAIVKLFHTPSRAH
Ga0208185_100021140	F015651	AGG	MAPNAPHLKALLNMAPSAFSSGDIGKLPALKSLSALRKEVERHFGKLSGQEIDALVGWFNRNFFRLDN

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.