NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208185_1119287

Scaffold Ga0208185_1119287


Overview

Basic Information
Taxon OID3300027533 Open in IMG/M
Scaffold IDGa0208185_1119287 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)616
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9232Long. (o)-106.9519Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045164Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0208185_11192871F045164N/AERLWWLATPLFSDTIADRRSEHLSRKVLIRLHSALSWDERYDWRGQFGGEAVSEMLVRYGWPSFSAFTGVREEADHASWMRFYDSTRTATAEYPQDRLHLLPEWSAVNDPFNAEAEAWQINMPPLKGGDEPAAQWWPAEHYGRAAGSIVQLRHQTALLRRDKDLVLAIAAELGSAGSALGDDTAAAVLIRTTAPRTVERVPRRAF

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