NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255085_1021535

Scaffold Ga0255085_1021535


Overview

Basic Information
Taxon OID3300027538 Open in IMG/M
Scaffold IDGa0255085_1021535 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1506
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000557Metagenome / Metatranscriptome1026N
F018160Metagenome / Metatranscriptome236N

Sequences

Protein IDFamilyRBSSequence
Ga0255085_10215351F018160N/AMVVWRMANKDVLKFEAIFAMKAVEFLNYAMLIHDILEAERQEAERMRR
Ga0255085_10215352F000557N/AMKLQDLTIDQFQRIAALEFSPALNDADKRVGVVAIVEGVEVAIVRDMPATALTKRYKAIVKEWNELPALAYKRKFKAGGKWWIPTVFTDELTAGQLIDLMDMNTTDERQLVQNLHRIMATLCREAGFMGWFPKKYDGSAHAERAELLKTHAKVGDVWGVVSFFLLSSESYLKILSDYSAHLTKTAQGQ
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