NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209791_1000221

Scaffold Ga0209791_1000221


Overview

Basic Information
Taxon OID3300027540 Open in IMG/M
Scaffold IDGa0209791_1000221 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26489
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (54.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000012Metagenome7108Y
F074112Metagenome120Y
F094500Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209791_100022112F000012AGGVPFESLGAVSYSPSIVNMAVSVAVCEIFSVKEWRDLENQVRGRSRSLKMAPFDRPYATFYWSAIVNIALTCAIFALFGVE
Ga0209791_100022113F000012AGGVPFERLDAVSYSRSIVIVAVPVAVCEMIFNVKEWRDLENQVRGRSRLLKMAPFDRLYAISYWSAIVNIALSCTIFEFFDVE
Ga0209791_100022114F094500GAGGMSLKLVPFESLGAVSYSPCIVTVAVSVAVCEIFSVKEWRDLENEELGVVQGH
Ga0209791_10002218F074112GAGGMLRVCIGLASIQNVERSLLLLAVSASDIPLRTIKLFSVLFSSAYSSMLQAVANKHSLVSRRLCDLHCMVVGNCFCHFVVRTSSNRSIASGAWPTVSYTQLRRR
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