NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209791_1046795

Scaffold Ga0209791_1046795


Overview

Basic Information
Taxon OID3300027540 Open in IMG/M
Scaffold IDGa0209791_1046795 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1635
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000163Metagenome1825Y
F006725Metagenome366Y
F010583Metagenome302Y
F023239Metagenome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0209791_10467951F010583N/AMLACDDIMPTGWTPAAARSTLEEWTRTFSRGQPCSCFRITVFYGVQAGQQKVCEWGPKIWKI
Ga0209791_10467952F023239N/AMPASSFSFFGFFAKGTGRTVRPIWTNESSKRVDPLKEVPFGGLKDVSLNFGGKIRQKLKFWGRE
Ga0209791_10467953F000163N/AMTSRELTSGFDFLSRGHFCVALLRLPMKFGADIFIQSGVIDIFPKIKMAAAAILDLFG
Ga0209791_10467954F006725N/AMAAAAILNFGKNVNNFGPDKDILHQIIWEDAPRRRGDDHVTKSRNWKLIRVTSSNKALKHMCVDLSDYKRYLKQIWYKTHIPHCQHARMAKFT
Ga0209791_10467955F000163N/ADLHLMASRELTSGFNFWSRCHLCMALLRLPMKFGADIFIQSGVIDIFPKLKMAAVAILDF
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