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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027545 Open in IMG/M |
| Scaffold ID | Ga0209008_1000004 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 195527 |
| Total Scaffold Genes | 177 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 152 (85.88%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Algoma, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 46.42 | Long. (o) | -83.37 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010701 | Metagenome / Metatranscriptome | 300 | Y |
| F034638 | Metagenome / Metatranscriptome | 174 | N |
| F062940 | Metagenome / Metatranscriptome | 130 | Y |
| F078988 | Metagenome / Metatranscriptome | 116 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209008_1000004128 | F078988 | GGGGG | MQRKLLARGRQCRGSGEINLDEREGVGQDGIMSRQTVPSNLSTALAEFGSQRAERIASQLSIEVCGFDRCGRFFTERSETCDVSDAGCKFYLRTEVEREAVVALRVITRSDRRGSVAAAVLFQVAHMERGSSGWTLGAWKLRAEDSWPVPGVQARDGAASFE |
| Ga0209008_1000004167 | F034638 | AGGAGG | MTYLRRAIVLLLFSCCIAPLAFGQLTLKVKIQSTPMERQLLFAKLNDRAATHHIRFVLVEEGFDYRVAYGVAGPVMTPYGPAAASASVTKVFDPSGAELFTFARDGRWTPDAAANATAKEIIKRIRRLRGI |
| Ga0209008_1000004177 | F062940 | AGGA | MHQSRNWFRGVLVFLLMLLGVNGSAIPTPSASGAMLPQSTQSSRISRYLKDLAREFSVEHLVRRKHTVPHFGEVTTTISVAPINFDGCTIVWNQMQEGTAAGQLIYIETHRFEVPLATLDAKRITVEPVPAGEGDRPGVDAGDYFVVSLPTVSGNKTVNVVDQNSVFNEKRGPITNVEQRKDPGASVRVSTEEKAEILKMQFQGAIAACAAAGQ |
| Ga0209008_100000453 | F010701 | AGGAGG | VPFLLLGIAGIGWAGFSLFTGKGYYKGCPPGGFDRAEHPYSFWIPTLIILGMGIFMILIFLGWIPLPPRAVHG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |