NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209008_1082658

Scaffold Ga0209008_1082658


Overview

Basic Information
Taxon OID3300027545 Open in IMG/M
Scaffold IDGa0209008_1082658 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)721
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000323Metagenome / Metatranscriptome1300Y
F005409Metagenome / Metatranscriptome401Y

Sequences

Protein IDFamilyRBSSequence
Ga0209008_10826581F005409N/AAPVLLKRTAESNQATAGNLQIVSPDVAIAEAPEKTSTTLTSSNHPTETIRVLDLSDPRNPKTLETFDKVTSLLPDSRHGLIFLTNNEGLWILRYNRPALLEPAKKKPPCDSNSEIMAMPPDCD
Ga0209008_10826582F000323N/ASFGSLLAQDSNPSPHSSKDSKGQLTVQGCVTRSSGDYVLIKQDPGMTYELQATGKIKFHRYLGQRVEVTGTESPSMSTSSDAMARMQSSSVTLTVASIKTIEKECPAR
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