NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209864_1000147

Scaffold Ga0209864_1000147


Overview

Basic Information
Taxon OID3300027547 Open in IMG/M
Scaffold IDGa0209864_1000147 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_25-Nov-14 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11730
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (4.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001808Metagenome / Metatranscriptome631Y
F004234Metagenome / Metatranscriptome447Y
F004451Metagenome / Metatranscriptome437N
F071222Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209864_100014719F004234N/AMNFIDLYKKDNTYFSNWTTDYDSTVYIAGTIEPFTYNASETDDEYMSLFILSDANLNLLKSKL
Ga0209864_10001472F004451AGGAMRPILDNYISAHYKEIRKYTNYFLVRMKSTISADAVINNSFLYLCNIDIEVTDPGKVKAYLLNTIKMQILWSTSLTNRQEKVTATDSTMPIVMDDDTDLYDKIREDMQYQDNMAVIETYRGKITDRIKLIVFQTYFDKGYSTARAMAEYFKIPVTSAHYWIQEIKTDLKNLRDEN
Ga0209864_100014721F071222N/AMDKEQIMKIIFTEEASLLDQAVELRDAFGNEDPATKRAYSQWVVISNLIDTINEEIN
Ga0209864_100014723F001808N/AMIFRLSVIILMLSSCSAQYHLNKAIKKGYKCEQTGDTIRITTLDSIPVIINDTIVWEKIINTKDTIIKYNTVYVPKTRLDKRIEYKIQVKTIYKDRLVYKYKYRAEGQKAKSEVKKVKAQRPRPNGNLSLLFVGVAIGLLLSYLFKFARERYMF
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