NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209523_1015414

Scaffold Ga0209523_1015414


Overview

Basic Information
Taxon OID3300027548 Open in IMG/M
Scaffold IDGa0209523_1015414 Open in IMG/M
Source Dataset NameForest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1458
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameDavy Crockett National Forest, Groveton, Texas, USA
CoordinatesLat. (o)31.11Long. (o)-95.15Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002349Metagenome / Metatranscriptome568Y
F025581Metagenome / Metatranscriptome201Y
F099744Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209523_10154142F025581GGAGGMPQSLTALDSLFFNIILATLAIGLPILVVLSIRFLWDRKLNLGRSKELEKLIWQLHRIASAMEHQMNLSFPAVQPGTEEPRDIAYLQQLAAQPTTAAPSIATPSAAVLSASDQPTVQQPVTLEPAAQQASLPRLERRGPSSDAPRAGVNSMFGL
Ga0209523_10154143F002349AGGAGMIVCFDQCDYCRSSIFSGQRWVREKIYDPALNGRDPSYHCYHAEPFAGQEGSCWEKHQMELEIARTTAYAA
Ga0209523_10154144F099744GGAMLSSSFDILRKDRRGKPILLAVVGDLDTARLRLSQLASLTPGEYFVFDPRTYQIVAAMEESQWQVT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.