Scaffold Ga0209255_1381508

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209255_1381508

Scaffold Ga0209255_1381508

Overview

Basic Information
Taxon OID	3300027550 Open in IMG/M
Scaffold ID	Ga0209255_1381508 Open in IMG/M
Source Dataset Name	Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius vacuus BAHAMAS.2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	567
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Hydrozoa → Hydroidolina → Anthoathecata → Aplanulata → Hydridae → Hydra → Hydra vulgaris	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	Bremen, Bremen, Germany
Coordinates	Lat. (^o)	53.109679	Long. (^o)	8.847516	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058745	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209255_13815082	F058745	GAG	MRLSSVKQKRMKEIENLREEIERQLLSMESYKKYVDEVRQKGTACDIARAASGLHDRADELLMLDVIEHTLDDFGHAHVKFTSSNFMTGDVNKTLGQLQINTVERGEVLYV

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