NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209338_1001151

Scaffold Ga0209338_1001151


Overview

Basic Information
Taxon OID3300027551 Open in IMG/M
Scaffold IDGa0209338_1001151 Open in IMG/M
Source Dataset NameOlavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8527
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameZanca-sant'andrea, Tuscany, Italy
CoordinatesLat. (o)42.8072Long. (o)10.1411Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000012Metagenome7108Y
F000163Metagenome1825Y
F003653Metagenome475Y

Sequences

Protein IDFamilyRBSSequence
Ga0209338_10011511F000163N/AMTSRELISVIDFWSRGHLRMAVVHLPIKFGADIFIQSGVIDIFPKFKMAAAAILDF
Ga0209338_10011515F000012AGGVVPFESLGSVSYSPSIVTMAVSLAISEIFSVKEWRDLENQVRGCLRSLKTAPFDRSYSYATLYWSAIVNIALSCTIFEFFDVE
Ga0209338_10011517F003653N/AVKMFDAGKTRMIGLQYGEKNYDDMLSRFHLIPERNRRTDKQTEMDGQICYINIARQFADM
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