NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209338_1022853

Scaffold Ga0209338_1022853


Overview

Basic Information
Taxon OID3300027551 Open in IMG/M
Scaffold IDGa0209338_1022853 Open in IMG/M
Source Dataset NameOlavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3234
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameZanca-sant'andrea, Tuscany, Italy
CoordinatesLat. (o)42.8072Long. (o)10.1411Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002668Metagenome538Y
F017238Metagenome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0209338_10228533F002668GGAGMSNDVFNFNFIALLLSEILGGPKFTLGGPAPPGRPLAENFL
Ga0209338_10228534F002668GAGGMSNGVVNFNFLAVLLSEILGGPKFTVGGQTPPGRP
Ga0209338_10228535F002668GAGMSNGIFNFNYPSPLLSEILGGLKLTLGGPTPPGRPLAEKFLYPKRVLLNI
Ga0209338_10228537F002668GAGMSNDVFNFNFLTLLLSELLAGSKFTLGGPTPPGRPLAEKYFYPKRILHNI
Ga0209338_10228538F017238GAGMSNGVFNFNLLALLLSELLGGPKFTLGGPTPPWTPPSGEICVPKASISQCLTVFLISTF
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