NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209338_1097208

Scaffold Ga0209338_1097208


Overview

Basic Information
Taxon OID3300027551 Open in IMG/M
Scaffold IDGa0209338_1097208 Open in IMG/M
Source Dataset NameOlavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1706
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameZanca-sant'andrea, Tuscany, Italy
CoordinatesLat. (o)42.8072Long. (o)10.1411Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000012Metagenome7108Y
F003653Metagenome475Y
F094500Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209338_10972081F003653N/ARMIGLPYGEKNYDDMLSRFHLIPERYGQTDGRTDRRTDRQTDRQTNRQIYYINIVRQYADAR
Ga0209338_10972082F094500GAGGMSLKLVPFESLGAVSYSPSIVTVAVSVAVCEIFRIKKWRDLENQVRDEVIENGAVR
Ga0209338_10972083F000012AGGVVPFESLGTVSYSPSIVTMAVSVAISEIYSVKEWRDLEKQVRGRSRSLKMALFDRPYATFYWSATVNIALSCTIFKFFDVE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.