NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208947_1055723

Scaffold Ga0208947_1055723


Overview

Basic Information
Taxon OID3300027553 Open in IMG/M
Scaffold IDGa0208947_1055723 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_04_M0_20 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)951
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015345Metagenome / Metatranscriptome255Y
F086311Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0208947_10557232F015345N/ALTTVDLFAIKERIVDILKSDTTNLWDSTPSDKTKFRKIEAGSPSPKAIQEPPLPRLWVTSDDVVANVSHVAVIENNAHLGEEYDIRIKILFVVEAKDGQKTEENIDDFTKSIIDKLETNYDLRDGAESTRLAEASQVTQIMDLPTMFRGDRVKGRVIKFKVIVRT
Ga0208947_10557233F086311N/AANGTQITIQSEDVGTIIKGTAKSRSGSTDTIIDLNDTTAITVYLRDPDGELSNHTATATNADGGTDGIWSFTTTSAIFSRNPGIWYIQAKYSLANSVVYYSNIKTLSVGETLL
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